Package: POD 1.2.0

POD: Probability of Detection for Qualitative PCR Methods

This tool computes the probability of detection (POD) curve and the limit of detection (LOD), i.e. the number of copies of the target DNA sequence required to ensure a 95 % probability of detection (LOD95). Other quantiles of the LOD can be specified. This is a reimplementation of the mathematical-statistical modelling of the validation of qualitative polymerase chain reaction (PCR) methods within a single laboratory as provided by the commercial tool 'PROLab' <http://quodata.de/>. The modelling itself has been described by Uhlig et al. (2015) <doi:10.1007/s00769-015-1112-9>.

Authors:Markus Boenn

POD_1.2.0.tar.gz
POD_1.2.0.zip(r-4.5)POD_1.2.0.zip(r-4.4)POD_1.2.0.zip(r-4.3)
POD_1.2.0.tgz(r-4.4-any)POD_1.2.0.tgz(r-4.3-any)
POD_1.2.0.tar.gz(r-4.5-noble)POD_1.2.0.tar.gz(r-4.4-noble)
POD_1.2.0.tgz(r-4.4-emscripten)POD_1.2.0.tgz(r-4.3-emscripten)
POD.pdf |POD.html
POD/json (API)
NEWS

# Install 'POD' in R:
install.packages('POD', repos = c('https://markusboenn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/markusboenn/pod/issues

On CRAN:

8 exports 3.29 score 0 dependencies 20 mentions 10 scripts 147 downloads

Last updated 5 years agofrom:dab972eb8d. Checks:OK: 3 NOTE: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 22 2024
R-4.5-winNOTEAug 22 2024
R-4.5-linuxNOTEAug 22 2024
R-4.4-winNOTEAug 22 2024
R-4.4-macNOTEAug 22 2024
R-4.3-winOKAug 22 2024
R-4.3-macOKAug 22 2024

Exports:analyzeSingleLabcomputePODexportExcelMacroexportQuodataexportSASgrohmann2015collaborativeplotPODsas.logistic

Dependencies:

POD: How to use the Excel macro

Rendered fromhowto.excel.Rmdusingknitr::knitron Aug 22 2024.

Last update: 2019-10-09
Started: 2019-04-04

Readme and manuals

Help Manual

Help pageTopics
Analyze Single Lab Qualitative PCR OutcomesanalyzeSingleLab
Compute the Probability Of Detection (POD)computePOD
Support Other PlatformsexportExcelMacro exportQuodata exportSAS foreign
Generate Plot to Analyze Single Lab PCR OutcomesplotPOD
Summary of POD objectsprint.pod
Get Test Datagrohmann2015collaborative sas.logistic testdata