Package: POD 1.2.0

POD: Probability of Detection for Qualitative PCR Methods

This tool computes the probability of detection (POD) curve and the limit of detection (LOD), i.e. the number of copies of the target DNA sequence required to ensure a 95 % probability of detection (LOD95). Other quantiles of the LOD can be specified. This is a reimplementation of the mathematical-statistical modelling of the validation of qualitative polymerase chain reaction (PCR) methods within a single laboratory as provided by the commercial tool 'PROLab' <http://quodata.de/>. The modelling itself has been described by Uhlig et al. (2015) <doi:10.1007/s00769-015-1112-9>.

Authors:Markus Boenn

POD_1.2.0.tar.gz
POD_1.2.0.zip(r-4.5)POD_1.2.0.zip(r-4.4)POD_1.2.0.zip(r-4.3)
POD_1.2.0.tgz(r-4.5-any)POD_1.2.0.tgz(r-4.4-any)POD_1.2.0.tgz(r-4.3-any)
POD_1.2.0.tar.gz(r-4.5-noble)POD_1.2.0.tar.gz(r-4.4-noble)
POD_1.2.0.tgz(r-4.4-emscripten)POD_1.2.0.tgz(r-4.3-emscripten)
POD.pdf |POD.html
POD/json (API)
NEWS

# Install 'POD' in R:
install.packages('POD', repos = c('https://markusboenn.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/markusboenn/pod/issues

On CRAN:

Conda:

4.70 score 10 scripts 202 downloads 20 mentions 8 exports 0 dependencies

Last updated 5 years agofrom:dab972eb8d. Checks:3 OK, 6 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 05 2025
R-4.5-winNOTEMar 05 2025
R-4.5-macNOTEMar 05 2025
R-4.5-linuxNOTEMar 05 2025
R-4.4-winNOTEMar 05 2025
R-4.4-macNOTEMar 05 2025
R-4.4-linuxNOTEMar 05 2025
R-4.3-winOKMar 05 2025
R-4.3-macOKMar 05 2025

Exports:analyzeSingleLabcomputePODexportExcelMacroexportQuodataexportSASgrohmann2015collaborativeplotPODsas.logistic

Dependencies:

POD: How to use the Excel macro

Rendered fromhowto.excel.Rmdusingknitr::knitron Mar 05 2025.

Last update: 2019-10-09
Started: 2019-04-04

Readme and manuals

Help Manual

Help pageTopics
Analyze Single Lab Qualitative PCR OutcomesanalyzeSingleLab
Compute the Probability Of Detection (POD)computePOD
Support Other PlatformsexportExcelMacro exportQuodata exportSAS foreign
Generate Plot to Analyze Single Lab PCR OutcomesplotPOD
Summary of POD objectsprint.pod
Get Test Datagrohmann2015collaborative sas.logistic testdata