Package: POD 1.2.0
POD: Probability of Detection for Qualitative PCR Methods
This tool computes the probability of detection (POD) curve and the limit of detection (LOD), i.e. the number of copies of the target DNA sequence required to ensure a 95 % probability of detection (LOD95). Other quantiles of the LOD can be specified. This is a reimplementation of the mathematical-statistical modelling of the validation of qualitative polymerase chain reaction (PCR) methods within a single laboratory as provided by the commercial tool 'PROLab' <http://quodata.de/>. The modelling itself has been described by Uhlig et al. (2015) <doi:10.1007/s00769-015-1112-9>.
Authors:
POD_1.2.0.tar.gz
POD_1.2.0.zip(r-4.7)POD_1.2.0.zip(r-4.6)POD_1.2.0.zip(r-4.5)
POD_1.2.0.tgz(r-4.6-any)POD_1.2.0.tgz(r-4.5-any)
POD_1.2.0.tar.gz(r-4.7-any)POD_1.2.0.tar.gz(r-4.6-any)
POD_1.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
POD/json (API)
NEWS
| # Install 'POD' in R: |
| install.packages('POD', repos = c('https://markusboenn.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/markusboenn/pod/issues
Last updated from:dab972eb8d. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | NOTE | 98 | ||
| source / vignettes | OK | 139 | ||
| linux-release-x86_64 | NOTE | 95 | ||
| macos-release-arm64 | NOTE | 89 | ||
| macos-oldrel-arm64 | NOTE | 74 | ||
| windows-devel | NOTE | 89 | ||
| windows-release | NOTE | 72 | ||
| windows-oldrel | NOTE | 72 | ||
| wasm-release | OK | 83 |
Exports:analyzeSingleLabcomputePODexportExcelMacroexportQuodataexportSASgrohmann2015collaborativeplotPODsas.logistic
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analyze Single Lab Qualitative PCR Outcomes | analyzeSingleLab |
| Compute the Probability Of Detection (POD) | computePOD |
| Support Other Platforms | exportExcelMacro exportQuodata exportSAS foreign |
| Generate Plot to Analyze Single Lab PCR Outcomes | plotPOD |
| Summary of POD objects | print.pod |
| Get Test Data | grohmann2015collaborative sas.logistic testdata |
